Open Edouard94 opened 1 month ago
I tried running the code by isolating different objects and parameters, but I can't identify the cause of this problem. Other tools, such as FigTree and Presto, display the expected tree correctly. However, ggtree seems to add a branch between Leidyana erratica and Gregarina blattarum, which shifts all the previous bootstrap values, making the tree incorrect.
Please let me know if additional data would help investigate this issue. Meanwhile, I am adjusting all the bootstrap values manually.
Thank you for your assistance.
Hello,
I am struggling with the following code I'm using to annotate my tree. It seems that ggtree adds an extra branch/node to the tree that should not be there, which disrupts all the bootstrap values.
My current code and the tree display are as follows:
Part of the tree for better readibility:![image](https://github.com/YuLab-SMU/ggtree/assets/60606060/322222ca-736b-4476-914c-ac76369e9d13)
The expected bootstrap values:![image](https://github.com/YuLab-SMU/ggtree/assets/60606060/52edf077-8a06-4bb5-ac76-45262032b547)
Any help or insights on why the ggtree function might be causing this issue would be greatly appreciated!