Open jonaudet opened 4 months ago
Hi, Great work on the ggtree and ggtreeExtra packages. I was trying to combine an msa plot (using ggmsa) with a tree as suggested here, but ran into a "argument 'data' is missing, with no default" error.
I believe the problem can be traced to this line, added more than a year after the above link: https://github.com/YuLab-SMU/ggtreeExtra/blame/76d6869addc3e99ce1e919c738a3a7074a361277/R/utilities.R#L160
running:
do.call(geom_line, list())
Produces: geom_line: na.rm = FALSE, orientation = NA stat_identity: na.rm = FALSE position_identity
geom_line: na.rm = FALSE, orientation = NA stat_identity: na.rm = FALSE position_identity
but running:
do.call(geom_msa, list())
Produces:
Error in (function (data, font = "helvetical", mapping = NULL, color = "Chemistry_AA", : argument "data" is missing, with no default
I thought I would report the problem, but it seems no one else has run into this issue in the 18 months since the change...
Hi, Great work on the ggtree and ggtreeExtra packages. I was trying to combine an msa plot (using ggmsa) with a tree as suggested here, but ran into a "argument 'data' is missing, with no default" error.
I believe the problem can be traced to this line, added more than a year after the above link: https://github.com/YuLab-SMU/ggtreeExtra/blame/76d6869addc3e99ce1e919c738a3a7074a361277/R/utilities.R#L160
running:
do.call(geom_line, list())Produces:
geom_line: na.rm = FALSE, orientation = NA stat_identity: na.rm = FALSE position_identitybut running:
do.call(geom_msa, list())Produces:
Error in (function (data, font = "helvetical", mapping = NULL, color = "Chemistry_AA", : argument "data" is missing, with no defaultI thought I would report the problem, but it seems no one else has run into this issue in the 18 months since the change...