Open ckeeling opened 1 year ago
It's not just RStudio. Even in the RGui app that ships with R, that message pops up. I'm a package developer and since my package suggests ggtree
(which depends on treeio
), anyone who loads my package also sees that ugly message. Would really appreciate a fix.
> library(treeio)
Registered S3 methods overwritten by 'treeio':
method from
MRCA.phylo tidytree
MRCA.treedata tidytree
Nnode.treedata tidytree
Ntip.treedata tidytree
ancestor.phylo tidytree
ancestor.treedata tidytree
child.phylo tidytree
child.treedata tidytree
full_join.phylo tidytree
full_join.treedata tidytree
groupClade.phylo tidytree
groupClade.treedata tidytree
groupOTU.phylo tidytree
groupOTU.treedata tidytree
inner_join.phylo tidytree
inner_join.treedata tidytree
is.rooted.treedata tidytree
nodeid.phylo tidytree
nodeid.treedata tidytree
nodelab.phylo tidytree
nodelab.treedata tidytree
offspring.phylo tidytree
offspring.treedata tidytree
parent.phylo tidytree
parent.treedata tidytree
root.treedata tidytree
rootnode.phylo tidytree
sibling.phylo tidytree
R 4.3.1; windows 10; all packages up to date from CRAN/Bioconductor as of today.
@ckeeling, @joshua-theisen I was able to solve this by updating the development version of treeio
on github.
remotes::install_github('YuLab-SMU/treeio')
Hopefully the fix will get pushed to Bioconductor soon!
I get a warning every time I start RStudio before any code has been executed:
Any suggestions how I can fix this, or is this something for you @GuangchuangYu ? treeio is a dependency for clusterProfiler that I am using.
Thanks, Chris