> jp <- system.file("extdata", "sample.jplace", package="treeio")
> tr1 <- read.jplace(jp)
> outfile <- tempfile()
> write.jplace(tr1, outfile)
> tr2 <- read.jplace(outfile)
> tr2
'treedata' S4 object that stored information
of
'/tmp/RtmpMNu1tc/file5df3c448e1d'.
...@ phylo:
Phylogenetic tree with 13 tips and 12 internal nodes.
Tip labels:
A, B, C, D, E, F, ...
Rooted; includes branch lengths.
with the following features available:
'nplace'.
# The associated data tibble abstraction: 25 × 4
# The 'node', 'label' and 'isTip' are from the phylo tree.
node label isTip nplace
<int> <chr> <lgl> <dbl>
1 1 A TRUE 0
2 2 B TRUE 0
3 3 C TRUE 0
4 4 D TRUE 0
5 5 E TRUE 0
6 6 F TRUE 1
7 7 G TRUE 0
8 8 H TRUE 0
9 9 I TRUE 0
10 10 J TRUE 0
# ℹ 15 more rows
# ℹ Use `print(n = ...)` to see more rows
Description
add
write.jplace
function to write thejplace
clas to file.Related Issue
https://github.com/YuLab-SMU/treeio/issues/112
Example