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YuLab-SMU
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treeio
:seedling: Base Classes and Functions for Phylogenetic Tree Input and Output
https://yulab-smu.top/treedata-book/
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Error in tests due to get_aes_var
#77
maelle
closed
2 years ago
3
update offspring
#76
xiangpin
closed
2 years ago
0
update child function
#75
xiangpin
closed
2 years ago
3
update citation
#74
xiangpin
closed
2 years ago
0
Standardize logo usage
#73
maelle
closed
2 years ago
0
Issue with the read.paml_rst function while reading rst file from CodeML/PAML
#72
JPFQueiroz
opened
2 years ago
0
Issue with loading MCC tree from BEAST v 1.10.4
#71
taylorpaisie
opened
2 years ago
4
update read.raxml
#70
xiangpin
closed
2 years ago
0
fix the issue when outgroup is missing in root function
#69
xiangpin
closed
2 years ago
0
typo
#68
xiangpin
closed
2 years ago
0
fix outgroup (character type) of root for treedata
#67
xiangpin
closed
3 years ago
0
read.bease fails to load NEXUS tree files with spaces in tip labels
#66
tgvaughan
closed
2 years ago
2
fix drop.tip when all tips removed
#65
xiangpin
closed
3 years ago
0
fix the add_pseudo_nodelabel when the node.label is not null in beast file
#64
xiangpin
closed
3 years ago
0
fixed bug when some node labels are blank in read.beast
#63
brj1
closed
3 years ago
4
to fix issues about additional parameters of drop.tip
#62
xiangpin
closed
3 years ago
0
As.phylo as.treedata
#61
xiangpin
closed
3 years ago
0
Optimization read.mcmctree
#60
xiangpin
closed
3 years ago
1
Error when convert tibble into tree with as.treedata or as.phylo: check_edgelist
#59
edoardomichielon
closed
2 years ago
0
add read.mcmctree function
#58
xiangpin
closed
3 years ago
0
drop.tip with method=="treedata" ignores additional parameters
#57
Percud
closed
3 years ago
0
fix read.beast
#56
xiangpin
closed
3 years ago
1
read.beast() adding brackets and part of taxa to @data classifiers in v1.15.7
#55
brmagalis
closed
3 years ago
0
add new as.phylo method for chronos class
#54
xiangpin
closed
3 years ago
2
fix bug for parsing MrBayes output
#53
xiangpin
closed
3 years ago
0
update read.fasta
#52
xiangpin
closed
3 years ago
3
update read.nhx to parse large tree file
#51
xiangpin
closed
3 years ago
2
Added read.beast.tree and exported write_beast_newick
#50
brj1
closed
3 years ago
3
tbl_tree object to phylo object lost bootstrap column
#49
ypchan
opened
3 years ago
2
update read.beast
#48
xiangpin
closed
3 years ago
4
treeio read tree files form nexus format with extra quotation marks
#47
wook2014
opened
3 years ago
3
Adding read.treeqza to parse tree qza file from output of qiime2
#46
xiangpin
closed
3 years ago
4
S3 overwrite warning in R version 4.0.3
#45
andemexoax
closed
2 years ago
7
update method to parse phyloxml format file
#44
xiangpin
closed
3 years ago
0
Regarding "read.beast" function
#43
avvypaks
closed
3 years ago
2
fix root method for treedata
#42
xiangpin
closed
3 years ago
3
fix a bug in read.tree() when a special newick file is used
#41
gaospecial
closed
3 years ago
6
remove NA node in read.nhx
#40
xiangpin
closed
3 years ago
2
Issue with function write.beast: not writing multiple BEAST trees
#39
ghost
closed
5 months ago
4
Drop tips for BEAST trees
#38
ksw9
opened
4 years ago
1
error while reproducing manual example
#37
xbarvazx
closed
4 years ago
8
as.treedata is not compatible with merge manipulation?
#36
ETaSky
closed
4 years ago
4
Reading RAxML-ng trees - coerce phyla to data.frame
#35
heather340
closed
4 years ago
3
Error while reading mlc file from CODEML
#34
MickAmest
opened
4 years ago
2
tree::offspring returns empty table with self_include = T
#33
daniilprigozhin
closed
4 years ago
2
could not find function "read.mega"
#32
haruosuz
closed
4 years ago
3
Mapping between phylogenetic tree edge table and the placement post-traversal edge
#31
HollyKArnold
opened
4 years ago
0
phyloxml parse
#30
xiangpin
closed
4 years ago
3
Add git and docs URL to the description
#29
jeroen
closed
4 years ago
1
support multi phylogeny in phyloxml and extra information
#28
xiangpin
closed
4 years ago
0
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