search

YuSugihara / QTL-seq

QTL-seq pipeline to identify causative mutations responsible for a phenotype
46 stars 23 forks source link

QTLseq plot error #14

Closed Haritha-gen closed 3 years ago

Haritha-gen commented 3 years ago

Hi, I am getting the following error in QTLseq pipeline, Please help to resolve

[QTL-seq:2020-12-17 14:11:25] indexing VCF successfully finished. Traceback (most recent call last): File "/home/haritha/.local/bin/qtlplot", line 11, in load_entry_point('qtlseq', 'console_scripts', 'qtlplot')() File "/home/haritha/.local/lib/python2.7/site-packages/pkg_resources/init.py", line 489, in load_entry_point return get_distribution(dist).load_entry_point(group, name) File "/home/haritha/.local/lib/python2.7/site-packages/pkg_resources/init.py", line 2852, in load_entry_point return ep.load() File "/home/haritha/.local/lib/python2.7/site-packages/pkg_resources/init.py", line 2443, in load return self.resolve() File "/home/haritha/.local/lib/python2.7/site-packages/pkg_resources/init.py", line 2449, in resolve module = import(self.module_name, fromlist=['name'], level=0) File "/home/haritha/QTL-seq/qtlseq/qtlplot.py", line 31 flush=True) ^ SyntaxError: invalid syntax [QTL-seq:2020-12-17 14:11:26] QTL-seq successfully finished.

YuSugihara commented 3 years ago

QTL-seq depends on Python version 3 as described in README on Github page. Therefore, please update your python from version 2 to 3. After that, please confirm whether the test data set successfully finishes.