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YuSugihara / QTL-seq

QTL-seq pipeline to identify causative mutations responsible for a phenotype
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QTLseq package not found error #22

Closed Nikhilasai1223 closed 2 years ago

Nikhilasai1223 commented 3 years ago

[QTL-seq:2021-06-14 16:33:29] start to run QTL-seq. [QTL-seq:2021-06-14 16:33:29] maximum number of threads which you can use is up to 16. [QTL-seq:2021-06-14 16:33:29] start to index reference fasta. [QTL-seq:2021-06-14 16:38:21] indexing of reference successfully finished. [QTL-seq:2021-06-14 16:38:21] start to filter reads. [QTL-seq:2021-06-14 16:58:13] filtering process successfully finished. [QTL-seq:2021-06-14 16:58:13] start to merge BAMs. [QTL-seq:2021-06-14 17:14:38] merging process successfully finished. [QTL-seq:2021-06-14 17:14:38] start to call variants. [QTL-seq:2021-06-14 17:35:02] variant calling successfully finished. [QTL-seq:2021-06-14 17:35:02] start to index VCF. [QTL-seq:2021-06-14 17:35:04] indexing VCF successfully finished. Traceback (most recent call last): File "/home/hkplab/anaconda2/bin/qtlplot", line 6, in from pkg_resources import load_entry_point File "/home/hkplab/.local/lib/python2.7/site-packages/pkg_resources/init.py", line 3251, in @_call_aside File "/home/hkplab/.local/lib/python2.7/site-packages/pkg_resources/init.py", line 3235, in _call_aside f(*args, **kwargs) File "/home/hkplab/.local/lib/python2.7/site-packages/pkg_resources/init.py", line 3264, in _initialize_master_working_set working_set = WorkingSet._build_master() File "/home/hkplab/.local/lib/python2.7/site-packages/pkg_resources/init.py", line 583, in _build_master ws.require(requires) File "/home/hkplab/.local/lib/python2.7/site-packages/pkg_resources/init.py", line 900, in require needed = self.resolve(parse_requirements(requirements)) File "/home/hkplab/.local/lib/python2.7/site-packages/pkg_resources/init.py", line 786, in resolve raise DistributionNotFound(req, requirers) pkg_resources.DistributionNotFound: The 'qtlseq' distribution was not found and is required by the application [QTL-seq:2021-06-14 17:35:09] QTL-seq successfully finished.

please help me with this error.

YuSugihara commented 3 years ago

It seems that you are using Python2. QTL-seq required Python3.