Support for csi index - Githubissues

YuSugihara / QTL-seq

QTL-seq pipeline to identify causative mutations responsible for a phenotype

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Support for csi index #23

Closed harmeet1990 closed 1 year ago

harmeet1990 commented 3 years ago

Hello I am working on the wheat genome and the pipeline crashes because the chromosomes are too big for the .bai index. Can you please suggest a fix with the .csi index?

YuSugihara commented 2 years ago

Thank you for your suggestion. We will implement the index files of BAM and VCF for bigger genomes.