YuSugihara
commented
11 months ago Sorry for my late response.
Thank you very much for reporting the error.
I actually found an error related to multiprocessing on Mac which I could not observe in Linux. I have already fixed this bug and have released as v2.2.4. I'm not sure if this error is relevant to your error, but I could find this error from your report.
Again, thank you very much for your report.
Best regards, Yu
I am a Mac M2 chip user. When I use this program on the test files, it goes wrong in the variant calling stage. Could you help me fix the problem? Thanks. The below is error message:
Process SpawnPoolWorker-3: Traceback (most recent call last): File "/Users/kenhsu/anaconda3/envs/py3.11/lib/python3.11/multiprocessing/process.py", line 314, in _bootstrap self.run() File "/Users/kenhsu/anaconda3/envs/py3.11/lib/python3.11/multiprocessing/process.py", line 108, in run self._target(*self._args, **self._kwargs) File "/Users/kenhsu/anaconda3/envs/py3.11/lib/python3.11/multiprocessing/pool.py", line 114, in worker task = get() ^^^^^ File "/Users/kenhsu/anaconda3/envs/py3.11/lib/python3.11/multiprocessing/queues.py", line 367, in get return _ForkingPickler.loads(res) ^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/Users/kenhsu/QTL-seq/qtlseq/mpileup.py", line 7, in <module> from qtlseq.vcf2index import Vcf2Index File "/Users/kenhsu/QTL-seq/qtlseq/vcf2index.py", line 10, in <module> cache = Manager().dict() ^^^^^^^^^ File "/Users/kenhsu/anaconda3/envs/py3.11/lib/python3.11/multiprocessing/context.py", line 57, in Manager m.start() File "/Users/kenhsu/anaconda3/envs/py3.11/lib/python3.11/multiprocessing/managers.py", line 563, in start self._process.start() File "/Users/kenhsu/anaconda3/envs/py3.11/lib/python3.11/multiprocessing/process.py", line 118, in start assert not _current_process._config.get('daemon'), \ AssertionError: daemonic processes are not allowed to have children