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YuSugihara / QTL-seq

QTL-seq pipeline to identify causative mutations responsible for a phenotype
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can you help me ? #5

Closed liuxiaowei0401 closed 4 years ago

liuxiaowei0401 commented 4 years ago

Hi, I think it's a good package. But I had a problem. Because I use VCF in different formats, I can't use these packages. I only need to use these packages to calculate CI. Can you give me a method to calculate 99% and 95% CI only according to reads depth.

YuSugihara commented 4 years ago

Hello and sorry for my late response. Currently, you have to use the proper format of VCF.

If you cannot prepare it by your script, the easiest way is to use our pipeline from the initial point.

Best regards