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YuSugihara / QTL-seq

QTL-seq pipeline to identify causative mutations responsible for a phenotype
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!!ERROR!! tabix -f -p vcf qtl-seq_result2/30_vcf/qtlseq.Chr1.vcf.gz >> qtl-seq_result2/log/tabix.Chr1.log 2>&1 #6

Closed kmosi0 closed 4 years ago

kmosi0 commented 4 years ago

I came across an error，anyone got this problem too and how to slove it ? hope for you reply ，Thank you a lot . !!ERROR!! tabix -f -p vcf qtl-seq_result2/30_vcf/qtlseq.Chr1.vcf.gz >> qtl-seq_result2/log/tabix.Chr1.log 2>&1

please check below:

[QTL-seq:2020-06-22 20:03:31] !!ERROR!! tabix -f -p vcf qtl-seq_result2/30_vcf/qtlseq.Chr2.vcf.gz >> qtl-seq_result2/log/tabix.Chr2.log 2>&1

please check below:

[QTL-seq:2020-06-22 20:07:10] !!ERROR!! tabix -f -p vcf qtl-seq_result2/30_vcf/qtlseq.Chr4.vcf.gz >> qtl-seq_result2/log/tabix.Chr4.log 2>&1

please check below:

kmosi0 commented 4 years ago

multiprocessing.pool.RemoteTraceback: """ Traceback (most recent call last): File "/home/zhanwei/project/20200103_yellow_white_Safflower_resequence_4X/QTL-seq/QTL-seq/qtlseq/mpileup.py", line 154, in mpileup check=True) File "/home/zhanwei/biosoft/Python_3.6/lib/python3.6/subprocess.py", line 418, in run output=stdout, stderr=stderr) subprocess.CalledProcessError: Command 'tabix -f -p vcf qtl-seq_result2/30_vcf/qtlseq.Chr11.vcf.gz >> qtl-seq_result2/log/tabix.Chr11.log 2>&1' returned non-zero exit status 127.