Open biofuture opened 3 months ago
Hello I run this: myDMP <- champ.DMP(beta = spemyNorm, pheno = as.numeric(A.hadrus), arraytype = "EPICv2")
[ Section 2: Find Numeric Covariates Linear Regression CpGs Start ]
You have found 180753 significant MVPs with a BH adjusted P-value below 0.05.
[ Section 2: Find Numeric Vector Related CpGs Done ]
[ Section 3: Match Annotation Start ]
[ Section 3: Match Annotation Done ]
[<<<<<< ChAMP.DMP END >>>>>>] [===========================] [You may want to process DMP.GUI() or champ.GSEA() next.]
However, the myDMP has zero rows of output.
Do you know what's wrong for this function with my data?
Thanks.
Hello I run this: myDMP <- champ.DMP(beta = spemyNorm, pheno = as.numeric(A.hadrus), arraytype = "EPICv2")
[ Section 2: Find Numeric Covariates Linear Regression CpGs Start ]
You have found 180753 significant MVPs with a BH adjusted P-value below 0.05.
[ Section 2: Find Numeric Vector Related CpGs Done ]
[ Section 3: Match Annotation Start ]
[ Section 3: Match Annotation Done ]
[<<<<<< ChAMP.DMP END >>>>>>] [===========================] [You may want to process DMP.GUI() or champ.GSEA() next.]
However, the myDMP has zero rows of output.
Do you know what's wrong for this function with my data?
Thanks.