I'm trying to analyse dataset GSE66441 (extracted from the GEO database) but an error code keeps popping up. Any ideas how to fix it, please?
[ Section 1: Read PD Files Start ]
CSV Directory: /Users/aminatabangura/Downloads/MSc Project/GPL13534_HumanMethylation450_15017482_v.1.1 edit.csv
Find CSV Success
Reading CSV File
Warning: incomplete final line found on '/Users/aminatabangura/Downloads/MSc Project/GPL13534_HumanMethylation450_15017482_v.1.1 edit.csv' Your pd file contains NO Array(Sentrix_Position) information.
Your pd file contains NO Slide(Sentrix_ID) information.
There is NO Pool_ID in your pd file.
There is NO Sample_Plate in your pd file.
There is NO Sample_Well in your pd file.
Error in champ.import(directory, arraytype = arraytype) :
Error Match between pd file and Green Channel IDAT file.
Hello,
I'm trying to analyse dataset GSE66441 (extracted from the GEO database) but an error code keeps popping up. Any ideas how to fix it, please?
[ Section 1: Read PD Files Start ] CSV Directory: /Users/aminatabangura/Downloads/MSc Project/GPL13534_HumanMethylation450_15017482_v.1.1 edit.csv Find CSV Success Reading CSV File Warning: incomplete final line found on '/Users/aminatabangura/Downloads/MSc Project/GPL13534_HumanMethylation450_15017482_v.1.1 edit.csv' Your pd file contains NO Array(Sentrix_Position) information. Your pd file contains NO Slide(Sentrix_ID) information. There is NO Pool_ID in your pd file. There is NO Sample_Plate in your pd file. There is NO Sample_Well in your pd file. Error in champ.import(directory, arraytype = arraytype) : Error Match between pd file and Green Channel IDAT file.