Conflict between virtualenv from pip (from an external installation) and apt

Zen0man commented 1 year ago

Hello,

I failed to intaller kresus on yunohost.

Describe the bug

The installation script reports an error.

Context

Hardware: Raspberry Pi at home
YunoHost version: 11.0.10.2 (stable)
I have access to my server: Through the webadmin
Are you in a special context or did you perform some particular tweaking on your YunoHost instance?: no
Using, or trying to install package version/branch: latest version available in the store yunohost apps

Steps to reproduce

If you performed a command from the CLI, the command itself is enough. For example:
Both webadmin and CLI don't work
I only click on install inside the app store in yunohost

Expected behavior

Have kresus intalled in my yunohost instance

Logs

Here the log : https://paste.yunohost.org/raw/etasugukix

And the extra of le CLI : Choose the URL path (after the domain) where this app should be installed: / Info: Installing kresus... Info: [+...................] > Validating installation parameters... Info: [#+..................] > Storing installation settings... Info: [##+.................] > Finding an available port... Info: [###+................] > Installing dependencies... Info: [####+...............] > Configuring system user... Info: [#####+..............] > Creating a PostgreSQL database... Info: [######+.............] > Setting up source files... Info: [#######+............] > Configuring NGINX web server... Info: [########++..........] > Installing woob... Error: Unable to install kresus: An error occurred inside the app installation script Info: The operation 'Install the 'kresus' app' could not be completed. Please share the full log of this operation using the command 'yunohost log share 20221104-000228-app_install-kresus' to get help Warning: Here's an extract of the logs before the crash. It might help debugging the error: Info: DEBUG - + log_path=/var/log/nginx/nginx.log Info: DEBUG - + timeout=300 Info: DEBUG - + '[' reload == stop ']' Info: DEBUG - + '[' reload == reload ']' Info: DEBUG - + action=reload-or-restart Info: DEBUG - + systemctl reload-or-restart nginx Info: INFO - [########++..........] > Installing woob... Info: DEBUG - + locale-gen C.UTF-8 Info: DEBUG - Generating locales (this might take a while)... Info: DEBUG - en_US.UTF-8... done Info: DEBUG - Generation complete. Info: DEBUG - + update-locale C.UTF-8 Info: DEBUG - + ynh_exec_as kresus virtualenv --python=python3 --system-site-packages /var/www/kresus/venv Info: DEBUG - + local user=kresus Info: DEBUG - + shift 1 Info: DEBUG - ++ whoami Info: DEBUG - + [[ kresus = root ]] Info: DEBUG - + sudo -u kresus virtualenv --python=python3 --system-site-packages /var/www/kresus/venv Info: DEBUG - ModuleNotFoundError: No module named 'virtualenv.activation.xonsh' Info: DEBUG - + ynh_exit_properly Warning: Removing the app after installation failure... Info: [+...................] > Loading installation settings... Info: [#++.................] > Stopping and removing the systemd service... Info: [###++...............] > Removing logrotate configuration... Info: [#####++.............] > Removing the PostgreSQL database... Info: [#######++...........] > Removing app main directory... Info: [#########+..........] > Removing NGINX web server configuration... Info: [##########++........] > Removing dependencies... Info: [############++......] > Removing various files... Info: '/var/log/kresus' wasn't deleted because it doesn't exist. Info: [##############++....] > Removing the dedicated system user... Info: [####################] > Removal of kresus completed Error: The operation 'Install the 'kresus' app' could not be completed. Please share the full log of this operation using the command 'yunohost log share 20221104-000228-app_install-kresus' to get help

Thank for your helps.

nicofrand commented 1 year ago

Hi,

can you give the result of those commands please?

apt-cache policy python3-virtualenv apt-cache policy virtualenv pip3 show virtualenv pip show virtualenv

Zen0man commented 1 year ago

Here the results of the commands/Voici le résultat des commandes :

apt-cache policy python3-virtualenv python3-virtualenv: Installed: (none) Candidate: 20.4.0+ds-2+deb11u1 Version table: 20.4.0+ds-2+deb11u1 500 500 http://raspbian.raspberrypi.org/raspbian bullseye/main armhf Packages

apt-cache policy virtualenv virtualenv: Installed: (none) Candidate: 20.4.0+ds-2+deb11u1 Version table: 20.4.0+ds-2+deb11u1 500 500 http://raspbian.raspberrypi.org/raspbian bullseye/main armhf Packages

pip3 show virtualenv Name: virtualenv Version: 20.16.5 Summary: Virtual Python Environment builder Home-page: https://virtualenv.pypa.io/ Author: Bernat Gabor Author-email: gaborjbernat@gmail.com License: MIT Location: /usr/local/lib/python3.9/dist-packages Requires: distlib, platformdirs, filelock Required-by: pipenv

ip show virtualenv Name: virtualenv Version: 20.16.5 Summary: Virtual Python Environment builder Home-page: https://virtualenv.pypa.io/ Author: Bernat Gabor Author-email: gaborjbernat@gmail.com License: MIT Location: /usr/local/lib/python3.9/dist-packages Requires: distlib, platformdirs, filelock Required-by: pipenv

nicofrand commented 1 year ago

OK that's weird for virtualenv as it is defined as a dependency. Can you try apt install virtualenv and try again please?

Le 5 novembre 2022 00:25:21 Zen0man @.***> a écrit :

Here the results of the commands/Voici le résultat des commandes : apt-cache policy python3-virtualenv python3-virtualenv: Installed: (none) Candidate: 20.4.0+ds-2+deb11u1 Version table: 20.4.0+ds-2+deb11u1 500 500 http://raspbian.raspberrypi.org/raspbian bullseye/main armhf Packages apt-cache policy virtualenv virtualenv: Installed: (none) Candidate: 20.4.0+ds-2+deb11u1 Version table: 20.4.0+ds-2+deb11u1 500 500 http://raspbian.raspberrypi.org/raspbian bullseye/main armhf Packages pip3 show virtualenv Name: virtualenv Version: 20.16.5 Summary: Virtual Python Environment builder Home-page: https://virtualenv.pypa.io/ Author: Bernat Gabor Author-email: @. License: MIT Location: /usr/local/lib/python3.9/dist-packages Requires: distlib, platformdirs, filelock Required-by: pipenvip show virtualenv Name: virtualenv Version: 20.16.5 Summary: Virtual Python Environment builder Home-page: https://virtualenv.pypa.io/ Author: Bernat Gabor Author-email: @. License: MIT Location: /usr/local/lib/python3.9/dist-packages Requires: distlib, platformdirs, filelock Required-by: pipenv— Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you commented.Message ID: @.***>

Zen0man commented 1 year ago

Hi,

I executed the command you sended me, here the result :

sudo apt install virtualenv Reading package lists... Done Building dependency tree... Done Reading state information... Done The following additional packages will be installed: python3-distlib python3-filelock python3-importlib-metadata python3-more-itertools python3-virtualenv python3-zipp The following NEW packages will be installed: python3-distlib python3-filelock python3-importlib-metadata python3-more-itertools python3-virtualenv python3-zipp virtualenv 0 upgraded, 7 newly installed, 0 to remove and 4 not upgraded. Need to get 0 B/301 kB of archives. After this operation, 1,340 kB of additional disk space will be used. Do you want to continue? [Y/n] Y Selecting previously unselected package python3-distlib. (Reading database ... 71244 files and directories currently installed.) Preparing to unpack .../0-python3-distlib_0.3.2+really+0.3.1-0.1_all.deb ... Unpacking python3-distlib (0.3.2+really+0.3.1-0.1) ... Selecting previously unselected package python3-filelock. Preparing to unpack .../1-python3-filelock_3.0.12-2_all.deb ... Unpacking python3-filelock (3.0.12-2) ... Selecting previously unselected package python3-more-itertools. Preparing to unpack .../2-python3-more-itertools_4.2.0-3_all.deb ... Unpacking python3-more-itertools (4.2.0-3) ... Selecting previously unselected package python3-zipp. Preparing to unpack .../3-python3-zipp_1.0.0-3_all.deb ... Unpacking python3-zipp (1.0.0-3) ... Selecting previously unselected package python3-importlib-metadata. Preparing to unpack .../4-python3-importlib-metadata_1.6.0-2_all.deb ... Unpacking python3-importlib-metadata (1.6.0-2) ... Selecting previously unselected package python3-virtualenv. Preparing to unpack .../5-python3-virtualenv_20.4.0+ds-2+deb11u1_all.deb ... Unpacking python3-virtualenv (20.4.0+ds-2+deb11u1) ... Selecting previously unselected package virtualenv. Preparing to unpack .../6-virtualenv_20.4.0+ds-2+deb11u1_all.deb ... Unpacking virtualenv (20.4.0+ds-2+deb11u1) ... Setting up python3-more-itertools (4.2.0-3) ... Setting up python3-filelock (3.0.12-2) ... Setting up python3-distlib (0.3.2+really+0.3.1-0.1) ... Setting up python3-zipp (1.0.0-3) ... Setting up python3-importlib-metadata (1.6.0-2) ... Setting up python3-virtualenv (20.4.0+ds-2+deb11u1) ... Setting up virtualenv (20.4.0+ds-2+deb11u1) ... Processing triggers for man-db (2.9.4-2) ...

Apparently I was missing some python dependence.

But unfortunately kresus still does not fit. Here is the link of the log :

https://paste.yunohost.org/raw/itulisezob

nicofrand commented 1 year ago

There might be a conflict with the version installed through pip...

Le 5 novembre 2022 11:40:26 Zen0man @.***> a écrit :

Hi, I executed the command you sended me, here the result : udo apt install virtualenv Reading package lists... Done Building dependency tree... Done Reading state information... Done The following additional packages will be installed: python3-distlib python3-filelock python3-importlib-metadata python3-more-itertools python3-virtualenv python3-zipp The following NEW packages will be installed: python3-distlib python3-filelock python3-importlib-metadata python3-more-itertools python3-virtualenv python3-zipp virtualenv 0 upgraded, 7 newly installed, 0 to remove and 4 not upgraded. Need to get 0 B/301 kB of archives. After this operation, 1,340 kB of additional disk space will be used. Do you want to continue? [Y/n] Y Selecting previously unselected package python3-distlib. (Reading database ... 71244 files and directories currently installed.) Preparing to unpack .../0-python3-distlib_0.3.2+really+0.3.1-0.1_all.deb ... Unpacking python3-distlib (0.3.2+really+0.3.1-0.1) ... Selecting previously unselected package python3-filelock. Preparing to unpack .../1-python3-filelock_3.0.12-2_all.deb ... Unpacking python3-filelock (3.0.12-2) ... Selecting previously unselected package python3-more-itertools. Preparing to unpack .../2-python3-more-itertools_4.2.0-3_all.deb ... Unpacking python3-more-itertools (4.2.0-3) ... Selecting previously unselected package python3-zipp. Preparing to unpack .../3-python3-zipp_1.0.0-3_all.deb ... Unpacking python3-zipp (1.0.0-3) ... Selecting previously unselected package python3-importlib-metadata. Preparing to unpack .../4-python3-importlib-metadata_1.6.0-2_all.deb ... Unpacking python3-importlib-metadata (1.6.0-2) ... Selecting previously unselected package python3-virtualenv. Preparing to unpack .../5-python3-virtualenv_20.4.0+ds-2+deb11u1_all.deb ... Unpacking python3-virtualenv (20.4.0+ds-2+deb11u1) ... Selecting previously unselected package virtualenv. Preparing to unpack .../6-virtualenv_20.4.0+ds-2+deb11u1_all.deb ... Unpacking virtualenv (20.4.0+ds-2+deb11u1) ... Setting up python3-more-itertools (4.2.0-3) ... Setting up python3-filelock (3.0.12-2) ... Setting up python3-distlib (0.3.2+really+0.3.1-0.1) ... Setting up python3-zipp (1.0.0-3) ... Setting up python3-importlib-metadata (1.6.0-2) ... Setting up python3-virtualenv (20.4.0+ds-2+deb11u1) ... Setting up virtualenv (20.4.0+ds-2+deb11u1) ... Processing triggers for man-db (2.9.4-2) ...Apparently I was missing some python dependence. But unfortunately kresus still does not fit. Here is the link of the log :https://paste.yunohost.org/raw/itulisezob — Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you commented.Message ID: @.***>

kedare commented 1 year ago

I get the same issue, full logs: https://paste.yunohost.org/raw/uxifihedir

nicofrand commented 1 year ago

Can you try to install virtualenv @kedare?

Also

apt-cache policy virtualenv
pip3 show virtualenv
which virtualenv

matthewspangler commented 1 year ago

I had the same problem. Same error message. pip uninstall virtualenv and relying on the virtualenv package provided through apt worked for me.

nicofrand commented 1 year ago

Thank you for the feedback @matthewspangler!

As a package maintainer I don't think there is anything I can do to resolve this conflict, I cannot uninstall the pip version of virtualenv, which might have been installed by another package.

YunoHost-Apps / kresus_ynh