I got that message on a fresh install in Yuno 4.0.8.2 :
/!\ Packagers! This app is still using the skipped/protected/unprotected_uris/regex settings which are now obsolete and deprecated... Instead, you should use the new helpers 'ynhpermission{create,urls,update,delete}' and the 'visitors' group to initialize the public/private access. Check out the documentation at the bottom of yunohost.org/groups_and_permissions to learn how to use the new permission mechanism.
I got that message on a fresh install in Yuno 4.0.8.2 :