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YunxiaoRen / ML-iAMR

MIT License
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Available example data ？ #1

Closed Kai6662 closed 2 years ago

Kai6662 commented 2 years ago

Hi YunxiaoRen，

I would like to use this tool to analyze my data. But I can't find the available example data from here. I am wondering could you create a test dataset to make us easier to use the tool. 😅😅😅😅😄😄😄 I am looking forward to your reply. Thank you.

Best regards, Kai

ferdoneh commented 2 years ago

Dear Ren, I hope you are doing well. I am a PHD student and recently read your journal about Prediction of antimicrobial resistance based on whole-genome sequencing and machine learning. I want to experience your results. Can you share your dataset with me? or can you help me with that? I am looking forward to hearing from you. Best regards, Faranak

YunxiaoRen commented 2 years ago

Dear Faranak，

Thanks for interest on our paper. I am glad to share the test data and provide help. I am on the Easter holiday in these days, I will do it when I am back.

Best wishes, Yunxiao Ren

---- 回复的原邮件 ---- | 发件人 | @.> | | 日期 | 2022年04月15日 18:05 | | 收件人 | @.> | | 抄送至 | @.***> | | 主题 | Re: [YunxiaoRen/ML-iAMR] Available example data ？ (Issue #1) |

Dear Ren, I hope you are doing well. I am a PHD student and recently read your journal about Prediction of antimicrobial resistance based on whole-genome sequencing and machine learning. I want to experience your results. Can you share your dataset with me? or can you help me with that? I am looking forward to hearing from you. Best regards, Faranak

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Kai6662 commented 2 years ago

Hiii Yunxiao,

Are you Chinese? I saw some Chinese in your email. Would you like to add my Wechat If it would not bother you. 😀😀😀 Best， Kai

Sent from my iPhone

On Apr 15, 2022, at 6:45 PM, YunxiaoRen @.***> wrote:

 Hello,

Thanks for interest on our paper. I am glad to share the test data and provide help. I am on the Easter holiday in these days, I will do it when I am back.

Best wishes, Yunxiao

---- 回复的原邮件 ---- | 发件人 | @.> | | 日期 | 2022年04月14日 07:53 | | 收件人 | @.> | | 抄送至 | @.***> | | 主题 | [YunxiaoRen/ML-iAMR] Available example data ？ (Issue #1) |

Hi YunxiaoRen，

I would like to use this tool to analyze my data. But I can't find the available example data from here. I am wondering could you create a test dataset to make us easier to use the tool. 😅😅😅😅😄😄😄 I am looking forward to your reply. Thank you.

Best regards, Kai

— Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you are subscribed to this thread.Message ID: @.***> — Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you authored the thread.

xiaomaofei commented 2 years ago

Dear Yunxiao： Hello, I am a graduate student. I want to experience your research results, but the relevant data cases can not be found, so I can not get accurate data results. Can you send the data set here? Please

YunxiaoRen commented 2 years ago

Dear Yunxiao： Hello, I am a graduate student. I want to experience your research results, but the relevant data cases can not be found, so I can not get accurate data results. Can you send the data set here? Please

Hello,

Sorry for the delay in updating the example data. Now the example file is available. One file is example_data.csv, in which the rows represent samples, and the columns represent SNPs in different positions, the numbers （1,2,3,4,0） represent A, G, C, T and N. The other file is example_pheno.csv, the order of samples name is consistent with the sample name in example_data.csv, and another column is class labels.

You also can use these data to explore FCGR encoding or one-hot encoding, and then do the model training.

Feel free to contact me if you have other questions.

Best, Yunxiao

YunxiaoRen commented 2 years ago

Hello,

Sorry for the delay in updating the example data. Now the example file is available. One file is example_data.csv, in which the rows represent samples, and the columns represent SNPs in different positions, the numbers （1,2,3,4,0） represent A, G, C, T and N. The other file is example_pheno.csv, the order of samples name is consistent with the sample name in example_data.csv, and another column is class labels.

You also can use these data to explore FCGR encoding or one-hot encoding, and then do the model training.

Feel free to contact me if you have other questions.

Best, Yunxiao

Hi YunxiaoRen，

I would like to use this tool to analyze my data. But I can't find the available example data from here. I am wondering could you create a test dataset to make us easier to use the tool. 😅😅😅😅😄😄😄 I am looking forward to your reply. Thank you.

Best regards, Kai

xiaomaofei commented 2 years ago

Hello, please again. In the data package you gave me, I lost two NPY files running on Python software. Without these two files, I cannot achieve the effect you have achieved.

------------------ 原始邮件 ------------------ 发件人: "YunxiaoRen/ML-iAMR" @.>; 发送时间: 2022年5月30日(星期一) 下午3:51 @.>; @.**@.>; 主题: Re: [YunxiaoRen/ML-iAMR] Available example data ？ (Issue #1)

Hello,

Sorry for the delay in updating the example data. Now the example file is available. One file is example_data.csv, in which the rows represent samples, and the columns represent SNPs in different positions, the numbers （1,2,3,4,0） represent A, G, C, T and N. The other file is example_pheno.csv, the order of samples name is consistent with the sample name in example_data.csv, and another column is class labels.

You also can use these data to explore FCGR encoding or one-hot encoding, and then do the model training.

Feel free to contact me if you have other questions.

Best, Yunxiao

Hi YunxiaoRen，

I would like to use this tool to analyze my data. But I can't find the available example data from here. I am wondering could you create a test dataset to make us easier to use the tool. 😅😅😅😅😄😄😄 I am looking forward to your reply. Thank you.

Best regards, Kai

— Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you commented.Message ID: @.***>

YunxiaoRen commented 2 years ago

---- 回复的原邮件 ---- | 发件人 | @.> | | 日期 | 2022年04月15日 19:04 | | 收件人 | @.> | | 抄送至 | @.**@.> | | 主题 | Re: [YunxiaoRen/ML-iAMR] Available example data ？ (Issue #1) |

Hiii Yunxiao,

Are you Chinese? I saw some Chinese in your email. Would you like to add my Wechat If it would not bother you. 😀😀😀 Best， Kai

Sent from my iPhone

On Apr 15, 2022, at 6:45 PM, YunxiaoRen @.***> wrote:

 Hello,

Thanks for your interest in our paper. I am glad to share the test data and provide help. I am on the Easter holiday these days, I will do it when I am back.

Best wishes, Yunxiao

---- 回复的原邮件 ---- | 发件人 | @.> | | 日期 | 2022年04月14日 07:53 | | 收件人 | @.> | | 抄送至 | @.***> | | 主题 | [YunxiaoRen/ML-iAMR] Available example data ？ (Issue #1) |

Hi YunxiaoRen，

I would like to use this tool to analyze my data. But I can't find the available example data from here. I am wondering could you create a test dataset to make us easier to use the tool. 😅😅😅😅😄😄😄 I am looking forward to your reply. Thank you.

Best regards, Kai

— Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you are subscribed to this thread.Message ID: @.***> — Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you authored the thread.

— Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you commented.Message ID: @.***>