What code to run before the Dataset Conversion Process(process of creation of nnUNet_raw, nnUNet_preprocessed, nnUNet_results)

YzzLiu / FracSegNet

A deep-learning method for segmenting fractures from 3D CT images.

https://link.springer.com/chapter/10.1007/978-3-031-43996-4_30

MIT License

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What code to run before the Dataset Conversion Process(process of creation of nnUNet_raw, nnUNet_preprocessed, nnUNet_results) #8

Open one2clouds opened 1 month ago

one2clouds commented 1 month ago

So before training nnUNet, you first prepare the data using utils.py script inside (Training/fracSegNet/dataset_conversion) folder. But, as I know the dataset is in the format of 001.mha .....100.mha. How come you guys read "_RI_frac.nii.gz" , "_LI_frac.nii.gz" , "_SA_frac.nii.gz" nifti files. Can you provide information about which code you've ran to get nii.gz files from the .mha files?