ZFIN / zebrafish-anatomical-ontology

Ontology describing the anatomy of Danio rerio from a single cell to adult fish. The namespace of the ontology is zebrafish_anatomical_ontology the prefix is ZFA. Updates to ZFA are released every other month. A subset of the ZFS http://purl.obolibrary.org/obo/zfs.obo is packaged with this ontology.
Other
6 stars 6 forks source link

Abdomen #11

Open cerivs opened 10 years ago

cerivs commented 10 years ago

We don't have the term abdomen....seems odd to me. Seems like it should be distinct from and a part of the trunk. -Amy

is_a organism subdivision.

The ventral subdivision of the trunk that contains the visceral organs.

Original comment by: cerivs

cerivs commented 10 years ago

Start at about the same time as visceral organs

Consider adding peritoneal cavity too.

Original comment by: cerivs

cerivs commented 10 years ago

Original comment by: cerivs

cerivs commented 10 years ago

Are you sure about the ventral qualifier? I'm not sure about fish subdivisions but a typical scheme is trunk = thorax + abdomen. E.g. in FMA the lumbar vertebra is in the abdomen (I know 'lumbar' isn't used as a vertebral subdivision is fish but I think broad divisions like 'abdomen' should be consistent)

Original comment by: cmungall

cerivs commented 10 years ago

See also https://github.com/obophenotype/uberon/issues/537

Original comment by: cmungall

cerivs commented 10 years ago

In adults the rostral-ventral area might be considered the thoracic area. I think the curator in question was thinking in embryos. The heart is immediately under the branchial arches and is almost in the head. Even in older fish the heart is more rostral than in mammals.

Would the wording vetro-caudal portion of the trunk be more acceptable

Original comment by: cerivs

cerivs commented 10 years ago

Older fish note heart is abutting gill arches.

Original comment by: cerivs

cerivs commented 10 years ago

Attached is an image of the abdominal areas of younger and older fishes.

Original comment by: cerivs