ZFIN / zebrafish-anatomical-ontology

Ontology describing the anatomy of Danio rerio from a single cell to adult fish. The namespace of the ontology is zebrafish_anatomical_ontology the prefix is ZFA. Updates to ZFA are released every other month. A subset of the ZFS http://purl.obolibrary.org/obo/zfs.obo is packaged with this ontology.
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NTR: terms related to neurocranium #131

Closed sabrinatoro closed 6 years ago

sabrinatoro commented 7 years ago

From ZDB-PUB-160411-1: I am either missing some anatomy terms, or I am unable to identify the corresponding terms to curate this publication. These terms are:

I cannot find any definition for these terms, only images with annotations.

The ontology would look like this: neurocranium

prechordal (anterior region of the neurocranium, neural crest-derived) postchordal (posterior region of the neurocranium)

parachordals lateral commissure occipital arches auditory capsule

anterior basicapsular commissure (abc) posterior basicapsular commissure (pbc)

cerivs commented 6 years ago

Are these bone or nervous system structures?

sabrinatoro commented 6 years ago

these are bones

sabrinatoro commented 6 years ago

From ZDB-PUB-160411-1: The neurocranium can be split into anterior and posterior halves (dashed line in Fig. 1A). While much research has been directed at the development of the neural crest-derived prechordal neurocranium (Fig. 1A, prech.), little is known of the development of the postchordal neurocranium (Fig. 1A, postch.). The postchordal neurocranium includes the parachordal cartilages (pc), which abut the notochord (n); as well as the anterior and posterior basicapsular commissures (abc and pbc, respectively) which encircle the developing ear, the lateral commissures (lc), and the occipital arches (oc) (Fig. 1A; de Beer, 1937).

cerivs commented 6 years ago

Made new terms anterior basicapsular commissure, lateral basicapsular commissure and posterior basicapsular commissure. Use post composition or individual cartilages for basil region of neurocranium. Figuring out neurocranial subdivisions is a moderately large project

sabrinatoro commented 6 years ago

@cerivs : what terms should I use for :

Not sure which correct (as in "most precise") terms should be used. Thanks!

cerivs commented 6 years ago

lateral commissure = lateral basicapsular commissure

postchordal neurocranium= posterior region neurocranium