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ZFIN / zebrafish-anatomical-ontology

Ontology describing the anatomy of Danio rerio from a single cell to adult fish. The namespace of the ontology is zebrafish_anatomical_ontology the prefix is ZFA. Updates to ZFA are released every other month. A subset of the ZFS http://purl.obolibrary.org/obo/zfs.obo is packaged with this ontology.
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roof plate and neural tube #132

Open cmungall opened 7 years ago

cmungall commented 7 years ago

trying to figure the difference between the two marked:

   po ZFA:0007058 ! roof plate ***  [end: "Juvenile:Days 45-89"] [start: "Segmentation:10-13 somites"]
        po ZFA:0000355 ! roof plate midbrain region [end: "Pharyngula:Prim-5"] [start: "Segmentation:10-13 somites"]
        po ZFA:0001177 ! roof plate spinal cord region [end: "Juvenile:Days 45-89"] [start: "Pharyngula:Prim-5"]
        po ZFA:0001311 ! roof plate rhombomere region [end: "Juvenile:Days 45-89"] [start: "Segmentation:10-13 somites"]
        po ZFA:0001358 ! roof plate diencephalic region [end: "Juvenile:Days 45-89"] [start: "Segmentation:10-13 somites"]
        po ZFA:0001436 ! roof plate neural tube region *** [end: "Pharyngula:Prim-5"] [start: "Segmentation:14-19 somites"]

RP is defined as being the dorsalmost part of the NT, which would make it equivalent to RPNTR

RPNTR is temporally coincident with NT. What is confusing is that RP is temporally narrower, despite it being a part-of parent

cerivs commented 6 years ago

My first guess is that we are dealing with some tricky developmental stage stuff here.

ybradford commented 5 years ago

I think we need to merge these