ZFIN / zebrafish-anatomical-ontology

Ontology describing the anatomy of Danio rerio from a single cell to adult fish. The namespace of the ontology is zebrafish_anatomical_ontology the prefix is ZFA. Updates to ZFA are released every other month. A subset of the ZFS http://purl.obolibrary.org/obo/zfs.obo is packaged with this ontology.
Other
6 stars 6 forks source link

New term request: ectomesenchyme #67

Closed cerivs closed 9 years ago

cerivs commented 10 years ago

I would like to propose a new AO term: ectomesenchyme

definition: cell population arising from the cranial neural crest and which cells populate a series of pharyngeal arches from which develops the support skeleton of the jaw and gills.

Ectomesenchyme develops from: cranial neural crest (ID: ZFA:0001194)

pharyngeal skeleton (ID: ZFA:0001216): Develops from ectomesenchyme.

Based on gene expression, the ectomesenchyme would appear around 15.5 hpf in zebrafish.

References:

Original comment by: nobody

cerivs commented 10 years ago

http://www.ncbi.nlm.nih.gov/pubmed/23739134 check info for term request.

Original comment by: cerivs

cerivs commented 10 years ago

Original comment by: nobody

cerivs commented 10 years ago

This publication is about trunk neural crest and fin mesenchyme. However, I didn't find any information about the existence (or not) of ectomesenchyme from cranial neural crest (which will give rise to the pharyngeal arches).

From the introduction of the paper: "[...] experiments have provided considerable evidence that, in addition to melanocytes and cells of the peripheral nervous system, anterior dorsal neural folds form cranial ectomesenchyme during neurulation. From this population arise skeletogenic, odontogenic and connective tissues of the craniofacial skeleton"

Therefore, the term ectomesenchyme appears to still be needed.

(sorry for the delay of my answer, the e-mail ended in my junk mail.)

Original comment by: nobody

cerivs commented 10 years ago

http://zfin.org/action/ontology/term-detail/ZFA:0005771

Original comment by: cerivs

cerivs commented 10 years ago

Original comment by: cerivs

cerivs commented 10 years ago

should this not be related to ZFA:0000787 ! mesenchyme derived from head neural crest

as it is in uberon?

Original comment by: cmungall