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ZJU-UoE-CCW-LAB / scCDC

single-cell Contamination Detection and Correction
GNU General Public License v3.0
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Using cellbender with scCDC? #5

Open yimwy opened 1 month ago

yimwy commented 1 month ago

Hi, I have a quick question. I am wondering if it is rationale to perform empty droplet based methods such as cellbender, then further perform decontamination using scCDC after clustering?

ChaochenWang commented 1 month ago

We recommend to perform DecontX and then scCDC. We have not tested combining cellbender and scCDC.

发件人: @. @.> 代表 yimwy 发送时间: 2024年5月31日 12:57 收件人: ZJU-UoE-CCW-LAB/scCDC @.> 抄送: Subscribed @.> 主题: [SPAM] [ZJU-UoE-CCW-LAB/scCDC] Using cellbender with scCDC? (Issue #5)

Hi, I have a quick question. I am wondering if it is rationale to perform empty droplet based methods such as cellbender, then further perform decontamination using scCDC after clustering?

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