search

ZW-xjtlu / exomePeak2

Peak calling and differential methylation for MeRIP-Seq
25 stars 5 forks source link

peak location and reads count strands #36

Open LoneKnightz opened 1 year ago

LoneKnightz commented 1 year ago

HI ZW-xjtlu,

I was using the newest exomepeak2 from github and met some issues.

image

We saw some cases like this peak 25895.

1, Is this normal that the peak can locate in the middle of the exon ?

2, May I ask does enomepeak2 strand specific in default ?

We used the default parameter, but we noticed for peak 25895 , which is at negative strand, reads count are all from positive strand.

image

Thanks