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Zafar-Lab / Margaret

Metric learning-based graph-partitioned trajectory inference from single-cell data
MIT License
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runtimes #40

Open ShobiStassen opened 3 months ago

ShobiStassen commented 3 months ago

Hello,

I am trying to run Margaret on ~100k Cells and find that the metric_learning step takes about 30minutes per episode. I'm using a machine with GeForce rtx 1080 Nvidia GPU. Is this a typical runtime for a dataset of this size?