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ZekunYin / RabbitQC

The new version is available at https://github.com/RabbitBio/RabbitQCPlus
GNU General Public License v3.0
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Doesn't work for Nanopore #2

Open monsanto-pinheiro opened 3 years ago

monsanto-pinheiro commented 3 years ago

Your code doesn't work for Nanopore, only creates the stats (HTML). You have all code of Json and Filtering commented in the TGSProcessor.cpp file.

ZekunYin commented 3 years ago

Hi, I'm sorry that RabbitQC only offers basic quality control functions for nanopore and pacbio sequencing data. For 3GS data RabbitQC works in the same way as NanoQC. Could you please describe your needs when processing the nanopore sequencing data? We may add some function modules to RabbitQC in next version.

monsanto-pinheiro commented 3 years ago

Hi, Sorry, but can you enumerate the "basic quality control functions" that RabbitQC offers to nanopore and pacbio? Well, you can add JSON report and filtering for the next version.

ZekunYin commented 3 years ago

Hi, The "basic quality control functions" for 3GS data are based on NanoQC. RabbitQC only reports the statistics information of the 3GS data as showed in the html report file. If there is other preprocessing operation you would like to perform on 3GS data, please inform me. I will see what I can do. And thanks for the feedback. Best, Zekun