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ZexinChen / AlphaTracker

AlphaTracker is a computer vision pipeline with the practical and real-time advantages , which requires minimal hardware requirements and produces reliable tracking of multiple unmarked animals. An easy-to-use user interface further enables manual inspection and curation of results.
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Missing features #15

Open abvazquez23 opened 2 years ago

abvazquez23 commented 2 years ago

I followed the steps in the behavioral clustering manual and changed the settings in settings.py for social behavior, but when I run the clustering script it says some of the features do not exist: Feature left_ear does not exists! All feature: ['body_change_ang', 'newFeatureName', 'displace_x', 'displace_y', 'displace_rho', 'displace_phi_c', 'displace_phi_s', 'body_length', 'head_length', 'head_body_angles', 'nose_fft_amp', 'nose_fft_ang', 'contourPCA_fft_amp', 'contourPCA_fft_ang', 'displace_x_TO', 'displace_y_TO', 'displace_rho_TO', 'displace_phi_c_TO', 'displace_phi_s_TO', 'body_length_TO', 'head_length_TO', 'head_body_angles_TO', 'nose_fft_amp_TO', 'nose_fft_ang_TO', 'contourPCA_fft_amp_TO', 'contourPCA_fft_ang_TO', 'two_body_ang', 'two_head_ang', 'TM_nose_RM_tail_displace_phi', 'TM_nose_RM_tail_displace_rho', 'RM_nose_TM_tail_displace_phi', 'RM_nose_TM_tail_displace_rho', 'nose_nose_displace_rho', 'nose_nose_displace_phi', 'TM_nose_RM_tail_distance', 'RM_nose_TM_tail_distance', 'nose_nose_distance'] Is there an updated version of fft_utils.py with all of the features listed in the behavioral clustering manual? Thanks!

Hizafa-Nadeem commented 1 year ago

I am facing the same error. @abvazquez23 were you able to resolve the error? Please, guide me.