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ZexinChen / AlphaTracker

AlphaTracker is a computer vision pipeline with the practical and real-time advantages , which requires minimal hardware requirements and produces reliable tracking of multiple unmarked animals. An easy-to-use user interface further enables manual inspection and curation of results.
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Error in clustering #23

Closed Hizafa-Nadeem closed 1 year ago

Hizafa-Nadeem commented 1 year ago

While running python fft_main_sep_twoMiceInteract.py . I received an error. Kindly, please inform what could be the potential reason for the error. I am using sample data and run the steps given on the Colab notebook.

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After this step I run the Analysis notebook. I receive a file not found error. I have checked that there is no folder/directory named as results_social on my drive. Please inform what should be the location of the results?

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laurelrr commented 1 year ago

Could you please check what is listed in AlphaTracker/BehavioralClustering/setting.py line 95:

The defaults should be: self.result_folder = './results/demo'

laurelrr commented 1 year ago

Also, the behavioral clustering has not been tested on Colaboratory. You may need to manually run the commands in run_all.sh.

Hizafa-Nadeem commented 1 year ago

I changed this path to self.result_folder = ./results/ind_clustering_demo.

Hizafa-Nadeem commented 1 year ago

I have also tried to run commands in run_all.sh manually in Colab. However, the same error persists.