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Zhang-lab / BeCorrect

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Segmentation fault (core dumped) #2

Open Priyamaddhesia opened 4 years ago

Priyamaddhesia commented 4 years ago

Hi,

I would be grateful if you could comment on the error 'Segmentation fault (core dumped)'.

Thank you in advance

cardonaaaa commented 1 year ago

Hello, I'm actually facing the same problem nowadays. Could it be because the bg files are too large? My files are about 3-4G, I tried using only one of them as argument, but it didn't work either.

Thanks in advance

ShaopengLiu1 commented 1 year ago

Hi, that usually happens when you run out of space for I/O. Maybe you should check your disk?

marta-nazzari commented 1 year ago

Hi! I am having the same problem ('Segmentation fault (core dumped)'). I made sure I have enough space on the disk and have all the permissions on the input and output folders/files.

vidarmehr commented 1 year ago

@ShaopengLiu1,

Thank you for developing this tool for batch effect correction. I have the same issue ('Segmentation fault (core dumped)"). I have enough space and read/write access to I/O files. Could you please help with this issue? Thank you.

ShaopengLiu1 commented 1 year ago

I'm not the author of this one so not quite clear about what's going on in detail. But I've forwarded this to the lab members.

It might be run out of disk or MEM, maybe this is an example https://www.geeksforgeeks.org/core-dump-segmentation-fault-c-cpp/

vidarmehr commented 1 year ago

@ShaopengLiu1 Thank you for your response and thanks for forwarding the issue to your lab members! I will look into possible solutions for this issue.