ZhangLab312 / DPAMSA

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Missing datasets #2

Open pesho-ivanov opened 11 months ago

pesho-ivanov commented 11 months ago

Hello,

I read your paper Multiple sequence alignment based on deep reinforcement learning with self-attention and positional encoding and I am excited to reproduce its results. The paper says that the datasets can be found in your repo and I also see you import them in main.py:

import dataset3
import dataset4
import dataset5
import dataset6

Seems like you have forgotten to upload the datasets, their descriptions, and the evaluation scripts. Could you please check this out?

Best, Pesho

GabrieleT0 commented 8 months ago

Hello,

I read your paper Multiple sequence alignment based on deep reinforcement learning with self-attention and positional encoding and I am excited to reproduce its results. The paper says that the datasets can be found in your repo and I also see you import them in main.py:

import dataset3
import dataset4
import dataset5
import dataset6

Seems like you have forgotten to upload the datasets, their descriptions, and the evaluation scripts. Could you please check this out?

Best, Pesho

I would also be interested in having datasets in order to reproduce the experiments (even just one would be fine).

Thank you.

Reza-Bioinf commented 7 months ago

Thanks for mentioning this. My students would like to reproduce the results. I also sent an email to the authors about this issue. I hope they have time to upload the dataset modules (at least one of them) in this github repository.

Regards, Reza