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ZhangLabGT / scMultiSim

A simulator for single cell multi-omics and spatial omics data that provides ground truth to benchmark a wide range of methods.
https://zhanglabgt.github.io/scMultiSim/
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UMI protocl #5

Open TomVuod opened 1 year ago

TomVuod commented 1 year ago

Hello, I tried to add noise using UMI protocol, but it generates the error:

add_expr_noise(sim_res, protocol = "UMI")
Error in .amplifyOneCell(true_counts_1cell = true_counts[, icell], protocol = protocol,  : 
  object 'get_prob' not found

I installed package from the bioconductor branch. Hopefully, it's not difficult to debug.

lhc70000 commented 1 year ago

Hi @TomVuod, thanks a lot for reporting the problem, and I have pushed a fix. Please re-install and try again.