ZhengXia dapars issues - Githubissues

ZhengXia / dapars

DaPars(Dynamic analysis of Alternative PolyAdenylation from RNA-seq)

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Traceback (most recent call last): File "/me5012/R01/software/dapars-master/src/DaPars_main.py", line 547, in <module> De_Novo_3UTR_Identification_Loading_Target_Wig_for_TCGA_Multiple_Samples_Main(sys.argv) File "/me5012/R01/software/dapars-master/src/DaPars_main.py", line 217, in De_Novo_3UTR_Identification_Loading_Target_Wig_for_TCGA_Multiple_Samples_Main DaPars_Filtering(Output_all_prediction_file, num_samples,num_group_1 ,Output_Motif_filtered_result_file) File "/me5012/R01/software/dapars-master/src/DaPars_main.py", line 342, in DaPars_Filtering All_p_adjust = multipletests(pvals=All_P_values, alpha=0.05, method="fdr_bh") File "/me5012/R01/bin/miniconda3/lib/python3.10/site-packages/statsmodels/stats/multitest.py", line 156, in multipletests alphacSidak = 1 - np.power((1. - alphaf), 1./ntests) ZeroDivisionError: float division by zero

#20 shuiruoyou opened 1 month ago
0
What does PASS_filter refer to？

#19 Squirrelity opened 10 months ago
3
print() syntax in python3

#18 iamnicogomez opened 1 year ago
0
Output column definitions

#17 gadiscymraes opened 2 years ago
0
DaPars_Extract_Anno.py - coordinates in output BED file (and 'Loci' column) are shifted 1 nucleotide from source transcript

#16 SamBryce-Smith opened 3 years ago
0
Docs link broken?

#15 grexor closed 2 years ago
3
Possible to install using conda?

#14 maximus-sci closed 2 years ago
2
does dapars support strand-specific RNA-Seq？

#13 sunhaifeng123 opened 5 years ago
1
Chrom name issue

#12 OSchwich opened 5 years ago
2
problem with -- list index out of range

#11 sunhaifeng123 opened 5 years ago
3
Migrate to Python 3

#10 rekado closed 2 years ago
5
hg19_4_19_2012_Refseq_id_from_UCSC.txt

#9 sumu2018 opened 6 years ago
1
through errors when mixing male and femal data

#8 nongbaoting closed 6 years ago
0
RNA-seq data normalization

#7 alnf opened 8 years ago
0
Only outputting 100 UTRs

#6 jfreimer opened 8 years ago
0
Fix problem wit e+06 notation in wig files created by bedtools

#5 klugem opened 9 years ago
0
DaPars does not handle scientific notation in the wig file coverage field (field 4)

#4 GoogleCodeExporter closed 9 years ago
1
Can not run Dapars: ImportError: cannot import name entr

#3 GoogleCodeExporter closed 9 years ago
1
Dapars generate divide by zero issue

#2 GoogleCodeExporter closed 9 years ago
2
DaPars does not handle scientific notation in the wig file coverage field (field 4)

#1 GoogleCodeExporter closed 9 years ago
1