ZhenyanLuo / Useful-but-not-important

Some tips
0 stars 0 forks source link

'Invalid alphabet type' error when running nhmmer #4

Open Junyan-Lin opened 2 years ago

Junyan-Lin commented 2 years ago

This issue and reasons have been well-described under this link: https://github.com/EddyRivasLab/hmmer/pull/274/commits/3b9eca2d9697e9d6e92ba9855276530f830cf3db The solution is downloading hmmer.zip from official website instead of installing with conda install Then replace the nhmmer.c file with the one in develop branch of https://github.com/EddyRivasLab/hmmer Run make, make check, make install to install hmmer package manually. At last, add --dna or --rna in the command.