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ZhiGroup / FastRecomb

Fast recombination map estimation using PBWT
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no output #2

Closed dosshra closed 8 months ago

dosshra commented 10 months ago

Hi I run the command as described in README. I use either the example file or my own file.
./FastRecomb -i sample_panel_1.vcf -L 100 -o ./ I get theses messages:

total matches: 19 total matches: 91 total matches: 130 total matches: 168 total matches: 166

but no output file. Thank you

ardalan-n commented 8 months ago

Hi, you need to provide a prefix for the output file(s):

./FastRecomb -i sample_panel_1.vcf -L 100 -o ./test_output

-rw-r--r-- 1 9.3K Jan 29 11:21 test_output.map -rw-r--r-- 1 15K Jan 29 11:21 test_output.pbwt -rw-r--r-- 1 1.8K Jan 29 11:21 test_output.raw

Best, Ardalan