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ZhiGroup / FastRecomb

Fast recombination map estimation using PBWT
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vcf requirements? #4

Open emgiles opened 1 month ago

emgiles commented 1 month ago

Hi, I would like to know what the vcf requirements are? Can it be .gz? Should previously filtering for only biallelic loci be done? I get a core dumped error using a vcf.gz with 7 individuals for a chromosome that is approx 52Mb. My vcf includes all sites.

ardalan-n commented 2 weeks ago

Hi, The current code only supports uncompressed VCF file format and bi-allelic sites.