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ZhiGroup / RAFFI

MIT License
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Human Chromosome Number Hard Coded Into Binary #2

Closed brittneykeel closed 2 years ago

brittneykeel commented 2 years ago

Hello,

I am attempting to run the binary version provided in the Debug folder. I am working with pig, which has 18 chromosomes. When I try to run, I get an error that it cannot find a VCF for chr22. I am assuming that the human chromosome number may be hard coded in.

ardalan-n commented 2 years ago

Hi,

The code was written and tested mainly for the human genome and the number 22 was hard coded. I just uploaded a new binary version (v.0.2) that allows you to change the number of chromosomes (using -c ).

Best, Ardalan

ardalan-n commented 2 years ago

RAFFI_v.0.2