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ZikunY / CARMA

GWAS genetics Fine-mapping method
GNU General Public License v3.0
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Installation issue : undefined symbol: dpocon_ #2

Closed Mickokoch closed 2 years ago

Mickokoch commented 2 years ago

Hi, I would like to use this R package but unfortunately I get this issue while installing CARMA with devtools:

Error: package or namespace load failed for ‘CARMA’ in dyn.load(file, DLLpath = DLLpath, ...):
unable to load shared object '/mfisun/R/x86_64-pc-linux-gnu-library/4.1/00LOCK-CARMA/00new/CARMA/libs/CARMA.so':
  /mfisun/R/x86_64-pc-linux-gnu-library/4.1/00LOCK-CARMA/00new/CARMA/libs/CARMA.so: undefined symbol: dpocon_
Error: loading failed

I can't find this error anywhere on the internet, checked all the dependencies, tried different R versions but the problem still remains. Have you ever encountered this error and do you have any idea how I could fix it ?

PaulTimmers commented 2 years ago

I encountered the same error and managed to fix it by switching to a different BLAS/LAPACK library. Specifically, I installed the Intel MLK version using the tutorial from https://csantill.github.io/RPerformanceWBLAS/.

Mickokoch commented 2 years ago

It worked ! Thank you for your help