issues
search
Zsailer
/
phylopandas
Pandas DataFrames for phylogenetics
BSD 3-Clause "New" or "Revised" License
71
stars
21
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Fix Bio.Alphabet import error
#39
VectorVP
opened
3 years ago
3
Bio.Alphabet removed from Biopython
#38
maxdevblock
opened
3 years ago
4
Add tree pruning method
#37
Zsailer
opened
4 years ago
1
phylovega update
#36
Zsailer
closed
4 years ago
0
read more information from blast xml file
#35
harmsm
closed
5 years ago
1
fixed bug for reading blast xml files
#34
harmsm
closed
5 years ago
1
Add MSA sub-dataframe to main dataframes.
#33
Zsailer
opened
5 years ago
1
fix read_xml - read blast xml output
#32
jharman25
closed
5 years ago
3
Read any newick
#31
Zsailer
closed
5 years ago
0
Newick Data Read Incorrectly
#30
mexiquin
closed
5 years ago
2
add tree nexus format and allow annotations in taxons+node data
#29
Zsailer
closed
5 years ago
0
Method missing read_newick
#28
jfbeltran
closed
5 years ago
3
User should be able to run the phylopandas tutorial notebook in Binder
#27
safay
closed
5 years ago
1
adding relaxed and sequential phylip formats
#26
Zsailer
closed
6 years ago
4
Add support for relaxed phylip format
#25
ClaudiaPaetzold
closed
6 years ago
1
add requirements to setup.py
#24
safay
closed
6 years ago
6
tutorial notebook
#23
Zsailer
closed
6 years ago
0
FIX: Fix up writing series to file.
#22
jvkersch
closed
6 years ago
0
pandas_series_to_biopython_seqrecord refers to an undefined variable
#21
jvkersch
closed
6 years ago
0
Include all dependencies in `requirements.txt`
#20
safay
opened
6 years ago
1
Refactor phylopandas to read various data into a single dataframe.
#19
Zsailer
closed
6 years ago
0
clean api
#18
Zsailer
closed
6 years ago
0
add phylopandas series
#17
Zsailer
closed
6 years ago
0
Update examples
#16
biophyser
closed
6 years ago
1
Updated examples
#15
biophyser
closed
6 years ago
1
Real phylovega link
#14
matsen
closed
6 years ago
1
Add tree module
#13
Zsailer
closed
6 years ago
0
Currently, PhyloPandas violates the pandas namespace...
#12
Zsailer
closed
6 years ago
0
Use pandas_flavor
#11
Zsailer
closed
6 years ago
0
rewrite core to use pandas accessor registry
#10
Zsailer
closed
6 years ago
0
revamp core dataframe
#9
Zsailer
closed
6 years ago
0
revamp phylopandas to truly overwrite the pandas dataframe
#8
Zsailer
closed
6 years ago
0
phylopandas DataFrame is not really a phylopandas DataFrame
#7
Zsailer
closed
6 years ago
1
add banner
#6
Zsailer
closed
6 years ago
0
initial logo ideas
#5
Zsailer
closed
6 years ago
1
add tests
#4
Zsailer
closed
6 years ago
0
add alphabet argument to read and write
#3
Zsailer
closed
6 years ago
0
Convert Pandas to Phylopandas
#2
Zsailer
closed
6 years ago
0
Added a clustal test file, an example notebook, and alignment parsing…
#1
biophyser
opened
6 years ago
3