Modified version of Alphafold to divide CPU part (MSA and template searching) and GPU part. This can accelerate Alphafold when predicting multiple structures
I have a fundamental doubt about the difference between Alphafold2 and Parafold running procedure, how to determine whether Parafold is doing Parallel task unlike sequential tasks performed by Alphafold2 for the first step involving Jackhmmer, Jackhmmer and HHblits searches.
Snippets of log files obtained from running Alphafold2 and Parafold
I have a fundamental doubt about the difference between Alphafold2 and Parafold running procedure, how to determine whether Parafold is doing Parallel task unlike sequential tasks performed by Alphafold2 for the first step involving Jackhmmer, Jackhmmer and HHblits searches.
Snippets of log files obtained from running Alphafold2 and Parafold
Alphafold2 log:
Parafold log:
They look similar to me, and both use 8cpus, 8cpus, and 4cpus, respectively. Please clarify this for me.
Thank you Aditi