It is a fantastic method for analyzing spatial transcriptomics!
I tried to use the PDAC dataset from the link you provide in paper(scRNA_data: GSE111672_PDAC-A-indrop-filtered-expMat.txt.gz, ST_data: GSM3036911_PDAC-A-ST1-filtered.txt.gz), but I find that the visualization results are not very consistent and I can not find the spatial location in ST_data. As shown in the figure below, this is the visualization result of PDAC, which is far from the paper. I would appreciate it if you could give me the dataset you use in paper. I am looking forward to you giving me some solutions and suggestions to the difficulties I meet.
Hi,
It is a fantastic method for analyzing spatial transcriptomics!
I tried to use the PDAC dataset from the link you provide in paper(scRNA_data: GSE111672_PDAC-A-indrop-filtered-expMat.txt.gz, ST_data: GSM3036911_PDAC-A-ST1-filtered.txt.gz), but I find that the visualization results are not very consistent and I can not find the spatial location in ST_data. As shown in the figure below, this is the visualization result of PDAC, which is far from the paper. I would appreciate it if you could give me the dataset you use in paper. I am looking forward to you giving me some solutions and suggestions to the difficulties I meet.
Thank you very much!