Zymo-Research / aladdin-shotgun

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sourmash default threshold_bp too long for viruses #100

Closed zxl124 closed 3 months ago

zxl124 commented 3 months ago

The default threshold_bp of 50000 is too long for some viruses, for example, COVID at ~29kb. This leads to non-detection of these viruses, which is a critical failure in some applications.