Closed nsharp2 closed 1 year ago
Pipeline may currently fail if FASTQ read length is smaller than the kmer size specified in the pipeline. We should add the following checks:
1) Change the trimming step to enforce reads >= k
2) samples without any reads remaining after trimming should be filtered
3) pipeline should generate an error message if all samples fail this filtering step
Pipeline may currently fail if FASTQ read length is smaller than the kmer size specified in the pipeline. We should add the following checks:
1) Change the trimming step to enforce reads >= k
2) samples without any reads remaining after trimming should be filtered
3) pipeline should generate an error message if all samples fail this filtering step