If one sample is not able to progress through pipeline analysis due to an error, then the entire pipeline may stop execution as it expects all samples to finish successfully.
For example, a very large FASTQ input file may cause a job timeout error at the sourmash gather step, in which case the entire pipeline fails.
zxl124
commented
1 year ago
If one sample is not able to progress through pipeline analysis due to an error, then the entire pipeline may stop execution as it expects all samples to finish successfully.
For example, a very large FASTQ input file may cause a job timeout error at the sourmash gather step, in which case the entire pipeline fails.