resistome run and resistome results scripts from AMRplusplus added

Zymo-Research / aladdin-shotgun

MIT License

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Closed nsharp2 closed 9 months ago

nsharp2 commented 9 months ago

Dockerfile updated to contain bwa mem and samtools
script to compile sample counts files into one table (amr_long_to_wide.py) added
bwa_align, resistome_run, and resistome_results processes added
amrplusplus subworkflow added
MEGARes database FASTA and annotations added