Zymo-Research / aladdin-shotgun

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sourmash gather run out of memory at k=21 for some samples. #87

Open zxl124 opened 10 months ago

zxl124 commented 10 months ago

With k=21, sourmash gather requires more memory for some samples. Right now, this process starts with 60G, then try again at 120G, then stops trying. We should consider starting at higher memory for k=21, and maybe set maxRetries to 2 for this step.