OSError: [Errno 39] Directory not empty: '/work/home/songbing/.cache/snakemake/snakemake/source-cache/runtime-cache/tmp9x52c7qu'

a-h-b / binny

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OSError: [Errno 39] Directory not empty: '/work/home/songbing/.cache/snakemake/snakemake/source-cache/runtime-cache/tmp9x52c7qu' #61

Open B1991ing opened 1 month ago

B1991ing commented 1 month ago

Dear Oskar,

Due to no config/config.init.yaml via mamba installation mamba create -n binny_env mamba activate binny_env mamba create --prefix binny bioconda::binny mamba deactivate

So, I still followed the official installation git clone https://github.com/a-h-b/binny.git cd binny ./binny -i config/config.init.yaml

But, one OSEerror happened as shown in the screenshot.

screenshot 1

screenshot 2

Could you please have a look on my problem?

Thank you very much.

Best,

Bing

ohickl commented 1 month ago

Hey, sorry only saw this just now. This again seems to be related on your file system for screen shot 1 and for 2 a network error. Did you check with your sys admin etc to see that everything is fine on the cluster? I.e. you have all necessary permissions, space to write files etc? id recommend the bioconda beta version i posted in the other issue, in theory it should be easier to install and be more stable