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a-ludi / dentist

Close assembly gaps using long-reads at high accuracy.
https://a-ludi.github.io/dentist/
MIT License
47 stars 6 forks source link

dentist collect v1.0.0-beta.3 requires DAScover from DASCRUBBER which failed to compile. #8

Closed BradleyRan closed 4 years ago

BradleyRan commented 4 years ago

dentist collect v1.0.0-beta.3 requires DAScover from DASCRUBBER. DAScover.c failed to compile.

DAScover.c:119:27: error: ‘DB_CSS’ undeclared (first use in this function) if ((Reads[j].flags & DB_CSS) == 0)

(snakemake) [randy.bradley@ceres dentist-test]$ cat logs/collect.log Error: missing external tools:

Check your PATH and/or install the required software.

a-ludi commented 4 years ago

Oh no, still that typo. Please just run sed -i 's/DB_CSS/DB_CCS/' *.{h,c} in the root of the DASCRUBBER repo. This should fix the compilation.

BradleyRan commented 4 years ago

Confirming that worked well. Thanks!

From: Arne notifications@github.com Reply-To: a-ludi/dentist reply@reply.github.com Date: Friday, July 24, 2020 at 3:04 PM To: a-ludi/dentist dentist@noreply.github.com Cc: "Bradley, Randy - ARS" randy.bradley@usda.gov, Author author@noreply.github.com Subject: Re: [a-ludi/dentist] dentist collect v1.0.0-beta.3 requires DAScover from DASCRUBBER which failed to compile. (#8)

Oh no, still that typo. Please just run sed -i 's/DB_CSS/DB_CCS/' *.{h,c} in the root of the DASCRUBBER repo. This should fix the compilation.

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