a-ludi / djunctor

Close assembly gaps using long-reads with focus on correctness.
MIT License
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Eliminate negative gaps #27

Open a-ludi opened 6 years ago

a-ludi commented 6 years ago

It is possible that a gap is reduced too much, ie. the resulting contigs overlap if correctly aligned. This has to be avoided at all costs because it makes downstream analysis much harder.

This is a follow up of issue #25.