Require minimum extension length

a-ludi / djunctor

Close assembly gaps using long-reads with focus on correctness.

MIT License

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Open a-ludi opened 6 years ago

a-ludi commented 6 years ago

Extensions with only a few bases are likely an artefact of imperfect alignments. Thus, they should be excluded.

[ ] Calculate confidence interval for displacement due to given error rates of reference and reads.
[X] Do not insert extensions that are improbable short after consensus.