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a-ludi / djunctor

Close assembly gaps using long-reads with focus on correctness.
MIT License
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Collection of true pile ups might be faulty #38

Closed a-ludi closed 6 years ago

a-ludi commented 6 years ago

From the simulator.c header comment:

[…] If a read pair is say b,e then

  • if b < e the read was sampled from [b,e] in the forward direction, and from [e,b]
  • in the reverse direction otherwise.

The current scripts for identifying he true pile ups do not account for that.

a-ludi commented 6 years ago

Fixed in test data generator.