Initialize repeat mask with user input

a-ludi / djunctor

Close assembly gaps using long-reads with focus on correctness.

MIT License

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Initialize repeat mask with user input #48

Closed a-ludi closed 6 years ago

a-ludi commented 6 years ago

In order to apply the algorithm multiple times the user needs to provide intermediate results as input, one of which is the repeat mask. The The user input shall be used as the initial value of the repeat mask which then gets updated by the new alignments.